Been a few days and I haven't had too much time to work on it. I got the throttle bodies cut in half, and figured out the mounting for the cable pulls, throttle position sensor, and importantly for the throttle bodies to the engine itself. Through some trimming of the stock CBR couplers and the original CL mounts, it looks like I can get a good seal and solid mounting, and still have the injectors pointed straight into the intake ports to hit the valves. The most difficult bit at this point for the throttle bodies will be chopping and modifying the fuel rail to route it around the frame.
I haven't pulled the old stator/rotor yet, so I don't really have anything to report on that front as of now.