I am doing mine now. I put footman loops on the doors. And ROK 12"s in them. I use the stock mouting points under the seat for the other halves. The drawback is you need to unclip the straps to open the doors. But I only put my tent and small duffy on them. So its no big deal.
For inside I bought liners from Feebay. $65 and no worries. Just pull the bag out and dig around in it. Then put in back in.