Thanks for these, Jeff.
I would definitely take a look at fitting the second pair of Rack Loops further back on the fender and wider apart, in a similar position to as shown in the instructions. This will give you increased adjustability via the cam straps so the bags can be more diagonally mounted (which will give more clearance from your pipe in the process) and also position the seat strap more rearwards. I'd also consider the possibility of anchoring the ladder-lock straps to the actual frame spar...
To be fair, you can probably leave the ones you've already fitted where they are, depending on what size tail pack you intend to use. Although forward and wider apart might be better.
If I was local, and you left me the keys to your garage, I'd happily come over and have it all ready to roll by the time you get back from out of town.