Pull the clutch! You want to stop in the shortest distance, if you don't pull the clutch, the engine will keep the transmission rotating, any rotation will be translated into movement, you want to stop, not to move.
That's what they told me in a secure driving class I took (we don't have nothing similar to MSF down here)
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2010 NX4 Falcon, 440cc Wiseco Big Bore, Stage II Hotcams, XR400R clutch, XR600 40mm Mikuni carb, MX handlebar (Wirtz), Custom exhaust.